Drug Discovery Explained

How are life-saving drugs discovered?

Join DNDi researcher and series host Fanny Escudié to learn more about how scientists are using the most advanced technologies to improve the lives of millions of neglected patients around the world.

Episodes

Episode 1
What are host-directed therapies?

Episode 2
What is high-throughput screening?

Episode 3
What is lead optimization?

Episode 4
Chagas: how to prove treatments work?

Episode 4

Chagas disease: A breakthrough method to address the longstanding biomarkers challenge

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'Ahuge challenge in drug research and development is that if you cannot measure the effect of the medicine you are developing, you cannot prove it works. This is an issue that scientists looking for new treatments for Chagas disease have been grappling with for more than half a century,’ says Eric Chatelain, Head of DNDi’s Drug Discovery Programme. 

The parasites that cause Chagas disease can hide undetected in the human body for years, even decades, making it very difficult to assess whether a medicine under study is effectively eliminating them. But DNDi and its partner InfYnity Biomarkers have designed a breakthrough method that could be key in unlocking research to find new treatments.   

What is Chagas disease? 

Chagas is a neglected, life-threatening disease that affects 6 to 7 million people, primarily in Latin America and is spreading to other regions because of population movements. It is caused by a parasite called Trypanosoma cruzi, which is transmitted to humans by the bites of insects called ‘kissing bugs.’ Transmission from mother to child and through contaminated food and drinks is also possible. 

Chagas disease often remains asymptomatic but will provoke severe complications in approximately 30% of infected people. Symptoms include damage to organs such as the gastrointestinal tract and the heart, with heart damage potentially leading to sudden death. As many people are not even aware they are infected until it is too late, the disease is sometimes called ‘the silent killer.’  

Despite the high burden, existing treatments for Chagas disease are far from optimal. They were discovered more than 50 years ago and can cause severe side effects. They also have to be administered for two to three months, making it difficult for patients to adhere to their treatment. Yet, making progress in finding better cures has been extremely difficult. 

A 'kissing bug', the insect that transmits Chagas disease

A 'kissing bug', the insect that transmits Chagas disease

Why finding new medicines for Chagas is so difficult?

Trypanosoma cruzi is a very tricky parasite. It can take different forms and infect nearly every type of human cell. It can hide in different organs like the heart or the intestine, and has also been found in the skin, brain, and stomach – and even in fat tissues where very few parasites are able to go,’ explains Jadel Kratz, DNDi’s Head of Discovery and R&D Partnerships in Latin America.  

Only a small number of parasites are found in the body. They are highly adapted to humans, evading the immune system and surviving in tissues for years. Occasionally, they appear in the blood, but current tools are insufficient to accurately detect their presence. This makes it difficult to determine whether a drug is effective or achieves a cure during clinical testing. 

Jadel Kratz, DNDi's Head of Discovery and R&D Partnerships

Jadel Kratz, DNDi's Head of Discovery and R&D Partnerships

The challenge with Chagas ‘biomarkers’  

Biomarkers are body characteristics — such as temperature, blood pressure, or the presence of antibodies in the blood — that can be measured to assess a medical condition. They can also measure how well the body responds to a treatment, for example, whether a medicine has eliminated parasites or viruses. 

Existing tools used to measure Chagas biomarkers and assess treatment efficacy have major flaws that keep researchers from determining whether a treatment is really working. One of the primary methods measures ‘seroreversion’. This involves tracking the disappearance of antibodies in the patient’s blood that are produced by the immune system in reaction to the pathogen of interest (in this case, Trypanosoma cruzi). 

When a treatment works, the body stops producing antibodies, making seroreversion a reliable tool for assessing drug efficacy. However, with Chagas disease, it can take years — even decades — to measure a decline in antibodies in adults, even after all Trypanosoma cruzi parasites are eliminated from the body (which clinicians refer to as ‘parasitological cure’). 

That means we cannot run a clinical trial using seroreversion alone to measure treatment outcomes. We would have to follow patients for ten years or more, which is not compatible with drug development timelines and costs. We don't have that time when we develop a new medicine,’ says Ivan Scandale, Discovery Leader at DNDi. 

Ivan Scandale, Discovery Leader at DNDi

Ivan Scandale, Discovery Leader at DNDi

Another commonly used method involves directly measuring the presence of the parasite’s DNA in the blood using polymerase chain reaction (PCR). However, Trypanosoma cruzi primarily resides in tissues, with very few parasites circulating in the bloodstream. As a result, the PCR method might not provide an accurate picture of the infection. For that reason, it is not accepted by regulatory authorities to register a drug for Chagas disease. 

A breakthrough: MultiCruzi

To overcome this biomarkers challenge, DNDi and its partner InfYnity Biomarkers had an idea: they utilized an InfYinity-developed assay called MultiCruzi, which can detect 15 different antibodies specific to the Trypanosoma cruzi parasite in patients’ blood. After diluting blood samples and visualizing the antibodies through colouration, they can analyze a nuanced, visual map of antibody presence. 

‘The trick behind this new method is dilution. This allows us to detect very subtle declines in antibody levels that cannot be detected with existing serological tests, which provide only a binary yes-or-no result. Dilution allows us to obtain a more nuanced signal compared to conventional serology; we can use this antibodies’ signature to predict future seroreversion.’
Eric Chatelain, whose team is leading the project

Because humans will react differently to a pathogen, some will develop more antibodies of a specific type than others. If we look at only one antibody, we might miss the signal for a given patient,’ says Chatelain. Testing 15 different antibodies together increases the chances of detection.  

By applying advanced statistical tools to analyze the visual map obtained through this assay, scientists can detect gradual reductions in immune response over time, helping them to quickly predict whether the treatment is working – meaning the parasites are gone and the patient is cured.  

To validate their model, Chatelain and his team used blood samples from adult Chagas patients who participated in the BENDITA clinical trial, a study conducted by DNDi and its partners in Colombia and Bolivia in 2016 and 2017. The samples were taken before treatment and 6 and 12 months post-treatment. ‘This data allowed us to confirm that our prediction model works,’ says Scandale. 

The method had already shown promising results in predicting treatment efficacy in children, for whom seroreversion is much faster than in adults. Now, DNDi and its partner have demonstrated that the MultiCruzi multiplex assay can also work for adults if dilution is added to the process. Just one year following treatment, the method allowed for the measurement of a reduction in antibodies among patients who received treatment compared to those who had not – a dramatic improvement over current conventional serological tests. 

Their findings were published in November 2024 in Nature Communications.

Eric Chatelain, Head of DNDi’s Drug Discovery Programme

Eric Chatelain, Head of DNDi’s Drug Discovery Programme

What’s next? 

The team is now working with the Ricardo Gutiérrez Hospital in Buenos Aires to refine the model further. Their aim is to obtain the green light from regulatory authorities to accept MultiCruzi as a predictor of parasitological cure for use in future clinical trials. This acceptance would mark a major turning point, not only in efforts to find better treatments for Chagas, but also for practitioners who would have a new monitoring tool to assess whether their patients are cured. 

This innovation could therefore be a true game changer. By providing a much faster and more accurate tool to measure treatment efficacy, the MultiCruzi method has the potential to transform Chagas research – bringing hope to millions of people affected by this terrible disease. 

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The Drugs for Neglected Diseases initiative (DNDi) is an international non-profit research and development organization that discovers, develops, and delivers safe, effective, and affordable treatments for neglected patients.